300 lines
7.6 KiB
JSON
300 lines
7.6 KiB
JSON
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{
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"$schema": "https://raw.githubusercontent.com/martinring/tmlanguage/master/tmlanguage.json",
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"name": "nextflow",
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"scopeName": "source.nextflow",
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"keyEquivalent": "^~N",
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"patterns": [
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{
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"include": "#nfl-rules"
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}
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],
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"repository": {
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"nfl-rules": {
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"patterns": [
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{
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"include": "#process-def"
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},
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{
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"include": "#workflow-def"
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},
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{
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"include": "#code-block"
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},
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{
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"include": "#include-statement"
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},
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{
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"include": "#implicit-variables"
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},
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{
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"comment": "method call and parens",
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"begin": "(\\w*\\()",
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"beginCaptures": {
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"1": {
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"patterns": [
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{
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"include": "source.nextflow-groovy"
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}
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]
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}
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},
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"end": "\\)",
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"patterns": [
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{
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"include": "#nfl-rules"
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}
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]
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},
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{
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"comment": "braces",
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"begin": "{",
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"end": "}",
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"patterns": [
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{
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"include": "#nfl-rules"
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}
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]
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},
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{
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"include": "source.nextflow-groovy"
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}
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]
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},
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"process-def": {
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"name": "process.nextflow",
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"begin": "^\\s*(process)\\s+(\\w+|\"[^\"]+\"|'[^']+')\\s*{",
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"beginCaptures": {
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"1": {
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"name": "keyword.nextflow"
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},
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"2": {
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"name": "function.nextflow"
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}
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},
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"end": "}",
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"patterns": [
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{
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"include": "#process-body"
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}
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]
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},
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"process-body": {
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"patterns": [
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{
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"name": "entity.name.function.nextflow",
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"match": "(?:accelerator|afterScript|beforeScript|cache|cpus|conda|container|containerOptions|clusterOptions|debug|disk|echo|errorStrategy|executor|ext|label|machineType|maxErrors|maxForks|maxRetries|memory|module|penv|pod|publishDir|queue|resourceLabels|scratch|stageInMode|stageOutMode|storeDir|tag|time)\\b"
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},
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{
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"name": "constant.block.nextflow",
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"match": "(?:input|output|when|script|shell|exec):"
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},
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{
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"name": "entity.name.function.nextflow",
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"match": "\\b(tuple|set|path|file|val|stdout)(\\(|\\s)"
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},
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{
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"include": "#implicit-variables"
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},
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{
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"comment": "method call and parens",
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"begin": "(\\w*\\()",
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"beginCaptures": {
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"1": {
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"patterns": [
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{
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"include": "source.nextflow-groovy"
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}
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]
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}
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},
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"end": "\\)",
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"patterns": [
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{
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"include": "#process-body"
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}
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]
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},
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{
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"comment": "braces",
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"begin": "{",
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"end": "}",
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"patterns": [
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{
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"include": "#process-body"
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}
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]
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},
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{
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"include": "source.nextflow-groovy#comments"
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},
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{
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"include": "source.nextflow-groovy#support-functions"
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},
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{
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"include": "source.nextflow-groovy#keyword"
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},
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{
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"include": "source.nextflow-groovy#values"
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},
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{
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"include": "source.nextflow-groovy#anonymous-classes-and-new"
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},
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{
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"include": "source.nextflow-groovy#types"
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},
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{
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"include": "source.nextflow-groovy#parens"
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},
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{
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"include": "source.nextflow-groovy#closures"
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},
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{
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"include": "source.nextflow-groovy#braces"
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}
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]
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},
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"workflow-def": {
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"name": "workflow.nextflow",
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"begin": "^\\s*(workflow)(?:\\s+(\\w+|\"[^\"]+\"|'[^']+'))?\\s*{",
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"beginCaptures": {
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"1": {
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"name": "keyword.nextflow"
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},
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"2": {
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"name": "constant.nextflow"
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}
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},
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"end": "}",
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"patterns": [
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{
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"include": "#workflow-body"
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}
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]
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},
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"workflow-body": {
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"patterns": [
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{
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"include": "#implicit-variables"
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},
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{
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"name": "constant.block.nextflow",
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"match": "(?:take|main|emit):"
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},
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{
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"name": "entity.name.function.nextflow",
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"match": "(?<=[\\s\\.])(branch|buffer|close|collate|collect|collectFile|combine|concat|count|countBy|cross|distinct|dump|filter|first|flatMap|flatten|groupTuple|ifEmpty|join|last|map|max|merge|min|mix|multiMap|randomSample|reduce|set|splitCsv|splitFasta|splitFastq|splitText|sum|take|tap|toInteger|toList|toSortedList|transpose|unique|until|view)(?=[{\\(\\s])"
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},
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{
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"comment": "Channel factory single line",
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"match": "\\b((?:C|c)hannel\\.)((fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?",
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"captures": {
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"1": {
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"name": "keyword.nextflow"
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},
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"2": {
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"name": "entity.name.function.nextflow"
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}
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}
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},
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{
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"comment": "Channel factory multi-line",
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"begin": "\\b((?:C|c)hannel)\\s*$",
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"beginCaptures": {
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"1": {
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"name": "keyword.nextflow"
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}
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},
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"end": "(^\\s*)(?:(\\.)(fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?",
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"endCaptures": {
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"1": {
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"name": "keyword.nextflow"
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},
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"2": {
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"name": "keyword.nextflow"
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},
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"3": {
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"name": "entity.name.function.nextflow"
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}
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}
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},
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{
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"comment": "method call and parens",
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"begin": "(\\w*\\()",
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"beginCaptures": {
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"1": {
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"patterns": [
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{
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"include": "source.nextflow-groovy"
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}
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]
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}
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},
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"end": "\\)",
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"patterns": [
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{
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"include": "#workflow-body"
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}
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]
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},
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{
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"comment": "braces",
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"begin": "{",
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"end": "}",
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"patterns": [
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{
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"include": "#workflow-body"
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}
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]
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},
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{
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"include": "source.nextflow-groovy#comments"
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},
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{
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"include": "source.nextflow-groovy#support-functions"
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},
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{
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"include": "source.nextflow-groovy#keyword"
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},
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{
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"include": "source.nextflow-groovy#values"
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},
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{
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"include": "source.nextflow-groovy#anonymous-classes-and-new"
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},
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{
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"include": "source.nextflow-groovy#types"
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},
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{
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"include": "source.nextflow-groovy#parens"
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},
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{
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"include": "source.nextflow-groovy#closures"
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},
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{
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"include": "source.nextflow-groovy#braces"
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}
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]
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},
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"include-statement": {
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"patterns": [
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{
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"match": "^\\b(include)\\b",
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"name": "keyword.nextflow"
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},
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{
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"match": "\\b(from)\\b",
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"name": "keyword.nextflow"
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}
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]
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},
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"implicit-variables": {
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"patterns": [
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{
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"match": "(?<=[^\\.\\w]|^)(params|nextflow|workflow|launchDir|moduleDir|projectDir|workDir)\\b",
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"name": "variable.language.nextflow"
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}
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]
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}
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}
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}
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